I think they're saying that the types of counter-examples are so pathological in most cases that if you're doing any kind of auto-generation of constraints - for example, a DSL backed by a solver - should have good enough heuristics.
Like it might even be the case that certain types of pretty powerful DSLs just never generate "bad structures". I don't know, I've not done research on circuits, but this kind of analysis shows up all the time in other adjacent fields.
Idk, I also thought so once upon the time. "Everyone knows that you can usually do much better than the worst case in NP-hard problems!" But at least for the non-toy problems I've tried using SAT/ILP solvers for, the heuristics don't improve on the exponential worst case much at all. It's seemed like NP-hardness really does meet the all-or-nothing stereotype for some problems.
Your best bet using them is when you have a large collection of smaller unstructured problems, most of which align with the heuristics.