It is subtantially more likely that this individual plane was tampered with or maintained incorrectly than these signals were anywhere close to being effectively jammed (but still less likely than them not having it on in the first place).
The power levels they are operating at are well into "do NOT stand in front of this" territory
iff is not high power, if it was then anything equipped with iff would all be vulnerable to any anti radiation missile made in the last 70 years.