alt Hacker NewsThe mechanism of action of glyphosate inhibits several important amino acid production processes in the gut. I'm simplifying here, but not having glyphosate in the food supply would be a good thing for the gut, and the science agrees on this.
Glyphosate for field prep also doesn't really come through in food, it's much worse with the pre-harvest desiccation.
You are inferring from our crude understanding of processes in general. Evidence is more specific.
Do you have an exclusion trial comparing glyphosate vs non-glyphosate diets? This is amenable to natural experiments where one country bans it on a specific date and the neighbor does not.