Sounds like user error to me. Codex gives an llm a tool to allow it to use shell in the context of the host and user in which it is running. If a resource is sensitive, and accessible in that context, then the user is doing something wrong. Would you change your practices if you treated your coding agent as an untrusted human ssh'd under the identity you use for it?

In any case. There are solutions in the comments on the issue, as well as this hn thread.