DeepSWE is slightly flawed in the sense that is uses only its own harness and that causes issues on models that are not correctly supported by it. There's huge amount of evidence that the harness plays a big role in how these models work and yet DeepSWE entirely removes that (and has probably only tested that it works fine with some favourite model of them).
There's also issues with cost calculation (as that harness doesn't use caches) and so on as reported on their github issues.
None of the benchmarks are perfect, but that does explain a lot of the variations between benchmarks.
I think DeepSWE is flawed in a different way: the tasks look like someone took a bunch of big highly technical PRs they found really well done, and inverted it into specs for agents to autistically execute. This is not really how people use agents in practice IMO. And it's why DeepSWE is so generous to OAI models, rigid task execution is the thing they're best at. I think FrontierCode matches the vibes a lot better.