There's some level of difference to be fair
Hacking is a concern in both but the bigger issue is potential for abuse of power.
In the case of border checks the target is by necessity someone that isn't a citizen. This means that:
1. We generally afford them less safeguards than citizens so it creates less precedent (both legal and in terms of overton window)
2. The potential for abuse is ultimately less because a traveler on a short term visa is unlikely to still be in the country / unable to leave if a hostile government comes to power and intends to abuse the data
Also fingerprints and a picture are significantly less invasive than pervasive video surveillance in public spaces