It's often not necessarily about visibility, but real iteration time.

For instance, let's say we are doing biology on plants, which is still much easier than doing human trials. No matter how motivated claude might get, you aren't getting a corn plant to grow in 40 seconds. Real world research pipelines involve stages where even greenhouses don't do, and sacks of grain are shipped to Hawaii, or Brazil, or wherever, to try to get practical data for a given test.

If your computer simulation is so accurate you can skip a step now done with biology, great, but it gets harder the larger your problem is. I might see if a molecule kills bacteria kind of quickly, but what does a molecule do to a real human being? Not so easy.

I don't follow how "we can see tiny stuff" = "it is possible to build closed system"?

Seeing tiny stuff doesn't magically give you enough info for Claude to reason with the system predictably (the way it can with source code).

No its not, this is complete dunning kruger, please provide an example.